species:   Artha
pid:       MI0001088
parent:    ath-MIR167c
paralog:   
locus:     3:1306622-1306781
matures:   ['UAAGCUGCCAGCAUGAUCUUG', 'AGGUCAUGCUGGUAGUUUCACC']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 3:1306622-1306781

0 out of bounds
10 alignments
10 proper strand
4 stranded perfect matches

         ***********************                                                                                                ************************        
CCAGUAGCAGUUAAGCUGCCAGCAUGAUCUUGUCUUCCUCUCUUAGGUUUCAUAUAUAGUUAAUAAAUAUUUUAUAUAUUUCUUGUUCUUACAAGAUUAUAUGAUCAUAGCUUAGAGAGAGAGAGAGACUAGGUCAUGCUGGUAGUUUCACCUGCUAAUG
.((.((((((..((((((((((((((((((.(((((((((((((((((((((((((.........(((((.....)))))((((((....)))))).)))))))....))))).))))))).)).)))).))))))))))))))))))...)))))).))
-----------UAAGCUGCCAGCAUGAUCUUG-------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 c
----------------------------------------------------------------------------------------------------------------------------------AGGUCAUGCUGGUAGUUUCACC-------- l=22 a=0 c*
-----------UAAGCUGCCAGCAUGAUCUUG-------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 ma
----------------------------------------------------------------------------------------------------------------------------------AGGUCAUGCUGGUAGUUUCACC-------- l=22 a=0 ma*

----------------------------------------------------------------------------------------------------------------------------------AGGUCAUGCUGGUAGUUUCAC--------- l=21 a=1 
---------------------------------------------------------------------------------------------------------------------------------UAGGUCAUGCUGGUAGUUUCACu-------- l=23 a=1 
-----------UAAGCUGCCAGCAUGAUCUUu-------------------------------------------------------------------------------------------------------------------------------- l=21 a=3 
-----------UAAGCUGCCAGCAUGAUCUUG-------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 (c,ma)
-----------UAAGCUGCCAGCAUGAUCUUGU------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
----------UUAAGCUGCCAGCAUGAUuU---------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 

mb-01111
ax-1011011
ku-01
ss-111111111100
fn-011
